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nf-core_modules/tests/modules/cellranger/mkref/test.yml

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new module `cellranger mkref` (#896) * add cellranger mkref module * add cellranger mkref tests * update test yml chksum * fix module linting * fix test yml * fix getprocessname * fix versions typo * fix cellranger test.yml * fix versions.yml * test versions.yml * fix grep version * fix cellranger version * add dockerfile and readme * review container statement * Update modules/cellranger/mkref/meta.yml Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> * add disclaimers * change location dockerfile Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
2021-10-28 11:33:57 +00:00
- name: cellranger mkref test_cellranger_mkref
Updated and fixed tests
2022-06-10 09:46:23 +00:00
command: nextflow run ./tests/modules/cellranger/mkref -entry test_cellranger_mkref -c ./tests/config/nextflow.config -c ./tests/modules/cellranger/mkref/nextflow.config
new module `cellranger mkref` (#896) * add cellranger mkref module * add cellranger mkref tests * update test yml chksum * fix module linting * fix test yml * fix getprocessname * fix versions typo * fix cellranger test.yml * fix versions.yml * test versions.yml * fix grep version * fix cellranger version * add dockerfile and readme * review container statement * Update modules/cellranger/mkref/meta.yml Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> * add disclaimers * change location dockerfile Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
2021-10-28 11:33:57 +00:00
tags:
- cellranger/mkref
Updated and fixed tests
2022-06-10 09:46:23 +00:00
- cellranger
new module `cellranger mkref` (#896) * add cellranger mkref module * add cellranger mkref tests * update test yml chksum * fix module linting * fix test yml * fix getprocessname * fix versions typo * fix cellranger test.yml * fix versions.yml * test versions.yml * fix grep version * fix cellranger version * add dockerfile and readme * review container statement * Update modules/cellranger/mkref/meta.yml Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> * add disclaimers * change location dockerfile Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
2021-10-28 11:33:57 +00:00
files:
- path: output/cellranger/homo_sapiens_chr22_reference/fasta/genome.fa
md5sum: f315020d899597c1b57e5fe9f60f4c3e
- path: output/cellranger/homo_sapiens_chr22_reference/fasta/genome.fa.fai
md5sum: 3520cd30e1b100e55f578db9c855f685
- path: output/cellranger/homo_sapiens_chr22_reference/genes/genes.gtf.gz
md5sum: 6d9b5f409bfea95022bc25b9590e194e
- path: output/cellranger/homo_sapiens_chr22_reference/reference.json
Trying to fix tests
2022-06-10 09:22:45 +00:00
md5sum: 6cc817f0923062e780e6573806840cea
new module `cellranger mkref` (#896) * add cellranger mkref module * add cellranger mkref tests * update test yml chksum * fix module linting * fix test yml * fix getprocessname * fix versions typo * fix cellranger test.yml * fix versions.yml * test versions.yml * fix grep version * fix cellranger version * add dockerfile and readme * review container statement * Update modules/cellranger/mkref/meta.yml Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> * add disclaimers * change location dockerfile Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
2021-10-28 11:33:57 +00:00
- path: output/cellranger/homo_sapiens_chr22_reference/star/Genome
md5sum: 22102926fadf5890e905ca71b2da3f35
- path: output/cellranger/homo_sapiens_chr22_reference/star/SA
md5sum: bcf3e1a855783105150b46c905465333
- path: output/cellranger/homo_sapiens_chr22_reference/star/SAindex
md5sum: b93fb07d342e6c32a00ebc4311c0ad38
- path: output/cellranger/homo_sapiens_chr22_reference/star/chrLength.txt
md5sum: c81f40f27e72606d7d07097c1d56a5b5
- path: output/cellranger/homo_sapiens_chr22_reference/star/chrName.txt
md5sum: 5ae68a67b70976ee95342a7451cb5af1
- path: output/cellranger/homo_sapiens_chr22_reference/star/chrNameLength.txt
md5sum: b190587cae0531f3cf25552d8aa674db
- path: output/cellranger/homo_sapiens_chr22_reference/star/chrStart.txt
md5sum: bc73df776dd3d5bb9cfcbcba60880519
- path: output/cellranger/homo_sapiens_chr22_reference/star/exonGeTrInfo.tab
md5sum: d04497f69d6ef889efd4d34fe63edcc4
- path: output/cellranger/homo_sapiens_chr22_reference/star/exonInfo.tab
md5sum: 0d560290fab688b7268d88d5494bf9fe
- path: output/cellranger/homo_sapiens_chr22_reference/star/geneInfo.tab
md5sum: 8b608537307443ffaee4927d2b428805
- path: output/cellranger/homo_sapiens_chr22_reference/star/genomeParameters.txt
- path: output/cellranger/homo_sapiens_chr22_reference/star/sjdbInfo.txt
md5sum: 5690ea9d9f09f7ff85b7fd47bd234903
- path: output/cellranger/homo_sapiens_chr22_reference/star/sjdbList.fromGTF.out.tab
md5sum: 8760c33e966dad0b39f440301ebbdee4
- path: output/cellranger/homo_sapiens_chr22_reference/star/sjdbList.out.tab
md5sum: 9e4f991abbbfeb3935a2bb21b9e258f1
- path: output/cellranger/homo_sapiens_chr22_reference/star/transcriptInfo.tab
md5sum: 0c3a5adb49d15e5feff81db8e29f2e36
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