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19 lines
532 B
Text
19 lines
532 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { INSTRAIN_PROFILE } from '../../../../modules/instrain/profile/main.nf'
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workflow test_instrain_profile {
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input = [
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[ id:'test', single_end:true ], // meta map
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[
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
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]
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]
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genome_fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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INSTRAIN_PROFILE ( input , genome_fasta , [] , [] )
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}
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