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process UNZIP {
tag "$archive"
label 'process_low'
conda (params.enable_conda ? "bioconda::p7zip=15.09" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/p7zip:15.09--h2d50403_4' :
'quay.io/biocontainers/p7zip:15.09--h2d50403_4' }"
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input:
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tuple val(meta), path(archive)
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output:
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tuple val(meta), path("${archive.baseName}/"), emit: unzipped_archive
path "versions.yml" , emit: versions
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when:
task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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if ( archive instanceof List && archive.name.size > 1 ) { exit 1, "[UNZIP] error: 7za only accepts a single archive as input. Please check module input." }
"""
7za \\
e \\
-o"${archive.baseName}"/ \\
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$args \\
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$archive
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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7za: \$(echo \$(7za --help) | sed 's/.*p7zip Version //; s/(.*//')
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END_VERSIONS
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"""
}