2021-05-12 13:56:46 +00:00
|
|
|
name: gffread
|
|
|
|
|
description: Validate, filter, convert and perform various other operations on GFF files
|
|
|
|
|
keywords:
|
|
|
|
|
- gff
|
|
|
|
|
- conversion
|
|
|
|
|
- validation
|
|
|
|
|
tools:
|
|
|
|
|
- gffread:
|
|
|
|
|
description: GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more.
|
|
|
|
|
homepage: http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread
|
|
|
|
|
documentation: http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread
|
|
|
|
|
tool_dev_url: https://github.com/gpertea/gffread
|
|
|
|
|
doi: 10.12688/f1000research.23297.1
|
|
|
|
|
licence: ['MIT']
|
|
|
|
|
|
|
|
|
|
input:
|
|
|
|
|
- gff:
|
|
|
|
|
type: file
|
2021-09-15 18:55:08 +00:00
|
|
|
description: A reference file in either the GFF3, GFF2 or GTF format.
|
|
|
|
|
pattern: "*.{gff, gtf}"
|
2021-05-12 13:56:46 +00:00
|
|
|
|
|
|
|
|
output:
|
|
|
|
|
- gtf:
|
|
|
|
|
type: file
|
|
|
|
|
description: GTF file resulting from the conversion of the GFF input file
|
2021-09-15 18:55:08 +00:00
|
|
|
pattern: "*.{gtf}"
|
2021-10-03 07:20:26 +00:00
|
|
|
- versions:
|
2021-05-12 13:56:46 +00:00
|
|
|
type: file
|
2021-10-03 07:20:26 +00:00
|
|
|
description: File containing software versions
|
2021-09-27 08:41:24 +00:00
|
|
|
pattern: "versions.yml"
|
2021-05-12 13:56:46 +00:00
|
|
|
|
|
|
|
|
authors:
|
|
|
|
|
- "@emiller88"
|
