nf-core_modules/tests/modules/bowtie2/align/test.yml

- name: bowtie2 align test_bowtie2_align_single_end
  command: nextflow run ./tests/modules/bowtie2/align -entry test_bowtie2_align_single_end -c ./tests/config/nextflow.config -c ./tests/modules/bowtie2/align/nextflow.config
  tags:
    - bowtie2/align
    - bowtie2
  files:
    - path: output/bowtie2/test.bam
    - path: output/bowtie2/test.bowtie2.log
      md5sum: 7b8a9e61b7646da1089b041333c41a87
    - path: output/bowtie2/versions.yml

- name: bowtie2 align test_bowtie2_align_paired_end
  command: nextflow run ./tests/modules/bowtie2/align -entry test_bowtie2_align_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/bowtie2/align/nextflow.config
  tags:
    - bowtie2/align
    - bowtie2
  files:
    - path: output/bowtie2/test.bam
    - path: output/bowtie2/test.bowtie2.log
      md5sum: bd89ce1b28c93bf822bae391ffcedd19
    - path: output/bowtie2/versions.yml
bowtie2: remove code duplication 2022-05-11 11:32:56 +00:00			`- name: bowtie2 align test_bowtie2_align_single_end`
Update tests/modules/bowtie2/align/test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-05-11 11:55:45 +00:00			`command: nextflow run ./tests/modules/bowtie2/align -entry test_bowtie2_align_single_end -c ./tests/config/nextflow.config -c ./tests/modules/bowtie2/align/nextflow.config`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`tags:`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- bowtie2/align`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`- bowtie2`
			`files:`
bowtie2: remove code duplication 2022-05-11 11:32:56 +00:00			`- path: output/bowtie2/test.bam`
			`- path: output/bowtie2/test.bowtie2.log`
			`md5sum: 7b8a9e61b7646da1089b041333c41a87`
			`- path: output/bowtie2/versions.yml`
bowtie2\|Added support for large indexes 2022-05-03 10:46:19 +00:00
bowtie2: remove code duplication 2022-05-11 11:32:56 +00:00			`- name: bowtie2 align test_bowtie2_align_paired_end`
Update tests/modules/bowtie2/align/test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-05-11 11:56:03 +00:00			`command: nextflow run ./tests/modules/bowtie2/align -entry test_bowtie2_align_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/bowtie2/align/nextflow.config`
bowtie2\|Added support for large indexes 2022-05-03 10:46:19 +00:00			`tags:`
			`- bowtie2/align`
			`- bowtie2`
			`files:`
bowtie2: remove code duplication 2022-05-11 11:32:56 +00:00			`- path: output/bowtie2/test.bam`
			`- path: output/bowtie2/test.bowtie2.log`
			`md5sum: bd89ce1b28c93bf822bae391ffcedd19`
			`- path: output/bowtie2/versions.yml`