nf-core_modules/tests/modules/multiqc/main.nf

17 lines
593 B
Text
Raw Normal View History

2020-12-01 06:49:52 +00:00
#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { FASTQC } from '../../../modules/fastqc/main.nf' addParams( options: [:] )
include { MULTIQC } from '../../../modules/multiqc/main.nf' addParams( options: [:] )
2020-12-04 06:55:16 +00:00
2020-12-01 06:49:52 +00:00
workflow test_multiqc {
2021-02-03 17:43:14 +00:00
input = [ [ id: 'test', single_end: false ],
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
]
2021-02-03 17:43:14 +00:00
FASTQC ( input )
MULTIQC ( FASTQC.out.zip.collect { it[1] } )
2020-12-01 06:49:52 +00:00
}