nf-core_modules/tests/modules/abacas/main.nf

17 lines
482 B
Text
Raw Normal View History

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { ABACAS } from '../../../modules/abacas/main.nf' addParams ( options: ['args' : '-m -p nucmer'] )
workflow test_abacas {
input = [ [ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['illumina']['scaffolds_fasta'], checkIfExists: true)
]
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
ABACAS ( input, fasta )
}