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nf-core_modules/tests/modules/bbmap/bbduk/test.yml

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Bbmap/bbduk (#487) * bbmap/bbduk module created * created bbmap/bbduk module * updated main.nf * changed test.yml tags * removed whitespaces * Adjusted main.nf spacing * whitespace, tags * fix optional files, tags, tidy code * fix suffix * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-05-10 10:45:52 +00:00
- name: bbmap bbduk test_bbmap_bbduk_single_end
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run tests/modules/bbmap/bbduk -entry test_bbmap_bbduk_single_end -c tests/config/nextflow.config
Bbmap/bbduk (#487) * bbmap/bbduk module created * created bbmap/bbduk module * updated main.nf * changed test.yml tags * removed whitespaces * Adjusted main.nf spacing * whitespace, tags * fix optional files, tags, tidy code * fix suffix * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-05-10 10:45:52 +00:00
tags:
- bbmap/bbduk
files:
- path: output/bbmap/test.trim.bbduk.log
contains:
- "Input is being processed as unpaired"
- path: output/bbmap/test.trim.fastq.gz
md5sum: a87d0cbd5ced7df8bf1751e4cb407482
- name: bbmap bbduk test_bbmap_bbduk_paired_end
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run tests/modules/bbmap/bbduk -entry test_bbmap_bbduk_paired_end -c tests/config/nextflow.config
Bbmap/bbduk (#487) * bbmap/bbduk module created * created bbmap/bbduk module * updated main.nf * changed test.yml tags * removed whitespaces * Adjusted main.nf spacing * whitespace, tags * fix optional files, tags, tidy code * fix suffix * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-05-10 10:45:52 +00:00
tags:
- bbmap/bbduk
files:
- path: output/bbmap/test.trim.bbduk.log
contains:
- "Input is being processed as paired"
- path: output/bbmap/test.trim_1.fastq.gz
md5sum: a87d0cbd5ced7df8bf1751e4cb407482
- path: output/bbmap/test.trim_2.fastq.gz
md5sum: 406e068fbe198f02b48e7e210cc0c69f
- name: bbmap bbduk test_bbmap_bbduk_se_ref
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run tests/modules/bbmap/bbduk -entry test_bbmap_bbduk_se_ref -c tests/config/nextflow.config
Bbmap/bbduk (#487) * bbmap/bbduk module created * created bbmap/bbduk module * updated main.nf * changed test.yml tags * removed whitespaces * Adjusted main.nf spacing * whitespace, tags * fix optional files, tags, tidy code * fix suffix * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-05-10 10:45:52 +00:00
tags:
- bbmap/bbduk
files:
- path: output/bbmap/test.trim.bbduk.log
contains:
- "Input is being processed as unpaired"
- path: output/bbmap/test.trim.fastq.gz
md5sum: 3970e82605c7d109bb348fc94e9eecc0
- name: bbmap bbduk test_bbmap_bbduk_pe_ref
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run tests/modules/bbmap/bbduk -entry test_bbmap_bbduk_pe_ref -c tests/config/nextflow.config
Bbmap/bbduk (#487) * bbmap/bbduk module created * created bbmap/bbduk module * updated main.nf * changed test.yml tags * removed whitespaces * Adjusted main.nf spacing * whitespace, tags * fix optional files, tags, tidy code * fix suffix * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-05-10 10:45:52 +00:00
tags:
- bbmap/bbduk
files:
- path: output/bbmap/test.trim.bbduk.log
contains:
- "Input is being processed as paired"
- path: output/bbmap/test.trim_1.fastq.gz
md5sum: 3970e82605c7d109bb348fc94e9eecc0
- path: output/bbmap/test.trim_2.fastq.gz
md5sum: 3970e82605c7d109bb348fc94e9eecc0
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