mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
18 lines
749 B
Text
18 lines
749 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { HOMER_MAKETAGDIRECTORY } from '../../../../modules/homer/maketagdirectory/main.nf' addParams( options: [args: '-format bed'] )
|
||
|
|
include { HOMER_MAKEUCSCFILE } from '../../../../modules/homer/makeucscfile/main.nf' addParams( options: [:] )
|
||
|
|
|
||
|
|
workflow test_homer_makeucscfile {
|
||
|
|
input = [[id:'test'],
|
||
|
|
[file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true),
|
||
|
|
file(params.test_data['sarscov2']['genome']['test2_bed'], checkIfExists: true)]]
|
||
|
|
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
||
|
|
|
||
|
|
HOMER_MAKETAGDIRECTORY (input, fasta)
|
||
|
|
HOMER_MAKEUCSCFILE ( HOMER_MAKETAGDIRECTORY.out.tagdir )
|
||
|
|
}
|
||
|
|
|