nf-core_modules/tests/modules/snpeff/test.yml

- name: snpeff test_snpeff
  command: nextflow run tests/modules/snpeff -entry test_snpeff -c tests/config/nextflow.config
  tags:
    - snpeff
  files:
    - path: output/snpeff/test.ann.vcf
      md5sum: 42db84cb186e33c6992f9306627201ac
    - path: output/snpeff/test.csv
Add snpeff (#546) * feat: add snpeff * fix: linting * fix: tests * fix: add csv output * fix: add params information * fix: improve script * Update software/snpeff/environment.yml * Update software/snpeff/environment.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * fix test Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-07-06 12:40:55 +00:00			`- name: snpeff test_snpeff`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run tests/modules/snpeff -entry test_snpeff -c tests/config/nextflow.config`
Add snpeff (#546) * feat: add snpeff * fix: linting * fix: tests * fix: add csv output * fix: add params information * fix: improve script * Update software/snpeff/environment.yml * Update software/snpeff/environment.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * fix test Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-07-06 12:40:55 +00:00			`tags:`
			`- snpeff`
			`files:`
			`- path: output/snpeff/test.ann.vcf`
			`md5sum: 42db84cb186e33c6992f9306627201ac`
			`- path: output/snpeff/test.csv`