nf-core_modules/modules/lofreq/callparallel/meta.yml

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name: lofreq_callparallel
description: It predicts variants using multiple processors
keywords:
- call
- variants
tools:
- lofreq:
description: Lofreq is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It's call-parallel programme predicts variants using multiple processors
homepage: https://csb5.github.io/lofreq/
documentation: https://csb5.github.io/lofreq/
doi: "10.1093/nar/gks918"
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- bam:
type: file
description: Sorted BAM file
pattern: "*.{bam}"
- bai:
type: file
description: BAM index file
pattern: "*.{bai}"
- fasta:
type: file
description: Reference genome FASTA file
pattern: "*.{fasta}"
- fai:
type: file
description: Reference genome FASTA index file
pattern: "*.{fai}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- vcf:
type: file
description: Predicted variants file
pattern: "*.{vcf}"
authors:
- "@kaurravneet4123"
- "@bjohnnyd"