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49 lines
1.5 KiB
YAML
49 lines
1.5 KiB
YAML
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name: "endorspy"
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description: endorS.py calculates endogenous DNA from samtools flagstat files and print to screen
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keywords:
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- endogenous DNA
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- ancient DNA
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- percent on target
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- statistics
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tools:
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- "endorspy":
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description: "endorS.py calculates endogenous DNA from samtools flagstat files and print to screen"
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homepage: "https://github.com/aidaanva/endorS.py"
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documentation: "https://github.com/aidaanva/endorS.py"
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tool_dev_url: "https://github.com/aidaanva/endorS.py"
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doi: "10.7717/peerj.10947"
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licence: "['GPL v3']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- stats:
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type: file
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description: output of samtools flagstat in a text file
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- stats_optional:
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type: file
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description: output of a second samtools flagstat run in a text file. If two files are supplied,
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the mapped reads of the second file is divided by the total reads in the first, since it
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assumes that the <samplefile.stats> are related to the same sample. Useful after BAM filtering.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- json:
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type: file
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description: file with the endogenous DNA calculation tailored for multiQC
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pattern: "*_mqc.json"
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authors:
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- "@aidaanva"
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