nf-core_modules/tests/modules/goat/taxonsearch/nextflow.config

process {

    publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }

    withName: GOAT_TAXONSEARCH {
         ext.args = '-l -b'
     }
}
Add module: goat/taxonsearch (#1866) * first commit * single taxon input * added .tsv output * input: single taxon or file with taxon identifiers * updated input and output * removed wrong tool description * added tests * ext.args = '-l -b' * fixed wrong input names * updated test file * Update modules/goat/taxonsearch/main.nf simple version output Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * removed 'NO_FILE' from input definition * added ! in if statement * optional input: empty list * successful updated test * added test with file * remove blank spaces in include {} * added test with taxa file Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> 2022-08-18 14:34:58 +00:00			`process {`

			`publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }`

			`withName: GOAT_TAXONSEARCH {`
			`ext.args = '-l -b'`
			`}`
			`}`