mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
19 lines
690 B
Text
19 lines
690 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { ISMAPPER } from '../../../modules/ismapper/main.nf' addParams( options: [:] )
|
||
|
|
|
||
|
|
workflow test_ismapper {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:false ], // meta map
|
||
|
|
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
|
||
|
|
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ],
|
||
|
|
file("https://github.com/jhawkey/IS_mapper/raw/master/test/inputs/S_suis_P17.gbk", checkIfExists: true),
|
||
|
|
file("https://github.com/jhawkey/IS_mapper/raw/master/test/inputs/ISSsu3.fasta", checkIfExists: true)
|
||
|
|
]
|
||
|
|
|
||
|
|
ISMAPPER ( input )
|
||
|
|
}
|