nf-core_modules/tests/modules/rseqc/readduplication/test.yml

- name: rseqc readduplication test_rseqc_readduplication
  command: nextflow run tests/modules/rseqc/readduplication -entry test_rseqc_readduplication -c tests/config/nextflow.config
  tags:
    - rseqc/readduplication
    - rseqc
  files:
    - path: output/rseqc/test.DupRate_plot.pdf
    - path: output/rseqc/test.DupRate_plot.r
      md5sum: 3c0325095cee4835b921e57d61c23dca
    - path: output/rseqc/test.pos.DupRate.xls
      md5sum: a859bc2031d46bf1cc4336205847caa3
    - path: output/rseqc/test.seq.DupRate.xls
      md5sum: ee8783399eec5a18522a6f08bece338b
Finish rseqc modules (#439) * initial 'modules create' of minia * fixed tests * finished meta.yml * fixed filters.yml * resolved issues in pytest_software.yml * add newline * Update software/minia/main.nf * fixing a bunch of module tests * remove vscode * fixed minia * added rseqc/bamstat tests * added tests/meta.yml for rseqc/inferexperiment * added test/meta.yml for rseqc/inner_distances * added meta.yml and tests/main.nf for junctionannotation (test not running) * added test/meta.yml for rseqc/readdistribution * finished test/meta.yml for rseqc/readduplication * added entries to pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-13 03:49:32 -04:00			`- name: rseqc readduplication test_rseqc_readduplication`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 05:10:18 -04:00			`command: nextflow run tests/modules/rseqc/readduplication -entry test_rseqc_readduplication -c tests/config/nextflow.config`
Finish rseqc modules (#439) * initial 'modules create' of minia * fixed tests * finished meta.yml * fixed filters.yml * resolved issues in pytest_software.yml * add newline * Update software/minia/main.nf * fixing a bunch of module tests * remove vscode * fixed minia * added rseqc/bamstat tests * added tests/meta.yml for rseqc/inferexperiment * added test/meta.yml for rseqc/inner_distances * added meta.yml and tests/main.nf for junctionannotation (test not running) * added test/meta.yml for rseqc/readdistribution * finished test/meta.yml for rseqc/readduplication * added entries to pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-13 03:49:32 -04:00			`tags:`
			`- rseqc/readduplication`
			`- rseqc`
			`files:`
			`- path: output/rseqc/test.DupRate_plot.pdf`
			`- path: output/rseqc/test.DupRate_plot.r`
			`md5sum: 3c0325095cee4835b921e57d61c23dca`
			`- path: output/rseqc/test.pos.DupRate.xls`
			`md5sum: a859bc2031d46bf1cc4336205847caa3`
			`- path: output/rseqc/test.seq.DupRate.xls`
			`md5sum: ee8783399eec5a18522a6f08bece338b`