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29 lines
863 B
Text
29 lines
863 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { UNTAR } from '../../../../modules/untar/main.nf'
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include { SRATOOLS_FASTERQDUMP } from '../../../../modules/sratools/fasterqdump/main.nf' addParams( options: [:] )
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workflow test_sratools_fasterqdump_single_end {
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archive = file(params.test_data['sarscov2']['illumina']['SRR13255544_tar_gz'], checkIfExists: true)
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UNTAR ( archive )
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def input = Channel.of([ id:'test_single_end', single_end:true ])
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.combine(UNTAR.out.untar)
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SRATOOLS_FASTERQDUMP ( input )
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}
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workflow test_sratools_fasterqdump_paired_end {
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archive = file(params.test_data['sarscov2']['illumina']['SRR11140744_tar_gz'], checkIfExists: true)
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UNTAR ( archive )
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def input = Channel.of([ id:'test_paired_end', single_end:false ])
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.combine(UNTAR.out.untar)
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SRATOOLS_FASTERQDUMP ( input )
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}
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