nf-core_modules/modules/cooler/cload/meta.yml

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name: cooler_cload
description: Create a cooler from genomic pairs and bins
keywords:
- cool
tools:
- cooler:
description: Sparse binary format for genomic interaction matrices
homepage: https://cooler.readthedocs.io/en/latest/index.html
documentation: https://cooler.readthedocs.io/en/latest/index.html
tool_dev_url: https://github.com/open2c/cooler
doi: "10.1093/bioinformatics/btz540"
licence: ['BSD-3-clause']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- pairs:
type: file
description: Path to contacts (i.e. read pairs) file.
- index:
type: file
description: Path to index file of the contacts.
- cool_bin:
type: value
description: Bins size in bp
- chromsizes:
type: file
description: Path to a chromsizes file.
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "versions.yml"
- cool:
type: file
description: Output COOL file path
pattern: "*.cool"
- cool_bin:
type: value
description: Bins size in bp
authors:
- "@jianhong"