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32 lines
1.6 KiB
YAML
32 lines
1.6 KiB
YAML
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- name: multivcfanalyzer test_multivcfanalyzer
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command: nextflow run ./tests/modules/multivcfanalyzer -entry test_multivcfanalyzer -c ./tests/config/nextflow.config -c ./tests/modules/multivcfanalyzer/nextflow.config
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tags:
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- multivcfanalyzer
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files:
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- path: output/multivcfanalyzer/MultiVCFAnalyzer.json
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md5sum: c841c9f04c6114911f308ea09a08980e
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- path: output/multivcfanalyzer/fullAlignment.fasta.gz
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contains:
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- ">Reference_MT192765.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/PC00101P/2020, complete genome"
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- path: output/multivcfanalyzer/info.txt
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contains:
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- "Run finished"
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- path: output/multivcfanalyzer/snpAlignment.fasta.gz
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contains:
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- "test.vcf"
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- path: output/multivcfanalyzer/snpAlignmentIncludingRefGenome.fasta.gz
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contains:
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- ">Reference_MT192765.1 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/PC00101P/2020, complete genome"
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- path: output/multivcfanalyzer/snpStatistics.tsv
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contains: ["statistics", "test.vcf", "test2.vcf"]
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- path: output/multivcfanalyzer/snpTable.tsv
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contains: ["Position", "test.vcf", "test2.vcf"]
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- path: output/multivcfanalyzer/snpTableForSnpEff.tsv
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md5sum: 8d7ab4ec98a89d290e301d6feae461aa
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- path: output/multivcfanalyzer/snpTableWithUncertaintyCalls.tsv
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contains: ["Position", "test.vcf", "test2.vcf"]
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- path: output/multivcfanalyzer/structureGenotypes.tsv
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contains: ["test.vcf", "test2.vcf"]
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- path: output/multivcfanalyzer/structureGenotypes_noMissingData-Columns.tsv
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contains: ["test.vcf", "test2.vcf"]
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