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13 lines
405 B
Text
13 lines
405 B
Text
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process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: TRIMMOMATIC_SE {
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ext.args2 = 'ILLUMINACLIP:TruSeq3-SE:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36'
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}
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withName: TRIMMOMATIC_PE {
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ext.args2 = 'ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36'
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}
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}
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