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17 lines
505 B
Text
17 lines
505 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { RGI_MAIN } from '../../../../modules/rgi/main/main.nf'
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include { HAMRONIZATION_RGI } from '../../../../modules/hamronization/rgi/main.nf'
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workflow test_hamronization_rgi {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['haemophilus_influenzae']['genome']['genome_fna_gz'], checkIfExists: true)
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]
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RGI_MAIN ( input )
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HAMRONIZATION_RGI ( RGI_MAIN.out.tsv, 'tsv', '1.0.2', '3.2.3' )
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}
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