mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 23:43:19 -05:00
19 lines
532 B
Text
19 lines
532 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { INSTRAIN_PROFILE } from '../../../../modules/instrain/profile/main.nf'
|
||
|
|
|
||
|
|
workflow test_instrain_profile {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:true ], // meta map
|
||
|
|
[
|
||
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
|
||
|
|
]
|
||
|
|
]
|
||
|
|
genome_fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
||
|
|
|
||
|
|
INSTRAIN_PROFILE ( input , genome_fasta , [] , [] )
|
||
|
|
}
|