mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 23:43:19 -05:00
27 lines
1.2 KiB
YAML
27 lines
1.2 KiB
YAML
|
- name: trimmomatic single-end
|
||
|
|
command: nextflow run ./tests/modules/trimmomatic -entry test_trimmomatic_single_end -c ./tests/config/nextflow.config -c ./tests/modules/trimmomatic/nextflow.config
|
||
|
|
tags:
|
||
|
|
- "trimmomatic"
|
||
|
|
files:
|
||
|
|
- path: "output/trimmomatic/test.SE.paired.trim.fastq.gz"
|
||
|
|
- path: "output/trimmomatic/test.log"
|
||
|
|
md5sum: e4c3f619e9b0e26847f8f3e3d9af319b
|
||
|
|
|
||
|
|
- name: trimmomatic paired-end
|
||
|
|
command: nextflow run ./tests/modules/trimmomatic -entry test_trimmomatic_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/trimmomatic/nextflow.config
|
||
|
|
tags:
|
||
|
|
- "trimmomatic"
|
||
|
|
files:
|
||
|
|
- path: "output/trimmomatic/test.log"
|
||
|
|
md5sum: 9629761761a34576b3484bf4174f681f
|
||
|
|
- path: "output/trimmomatic/test.paired.trim_1.fastq.gz"
|
||
|
|
- path: "output/trimmomatic/test.unpaired.trim_1.fastq.gz"
|
||
|
|
- path: "output/trimmomatic/test.paired.trim_2.fastq.gz"
|
||
|
|
- path: "output/trimmomatic/test.unpaired.trim_2.fastq.gz"
|
||
|
|
|
||
|
|
- name: trimmomatic no adapter specified
|
||
|
|
command: nextflow run ./tests/modules/trimmomatic -entry test_trimmomatic_no_adaptor -c ./tests/config/nextflow.config -c ./tests/modules/trimmomatic/nextflow.config
|
||
|
|
tags:
|
||
|
|
- "trimmomatic"
|
||
|
|
exit_code: 1
|