nf-core_modules/modules/tabix/bgziptabix/meta.yml

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name: tabix_bgziptabix
description: bgzip a sorted tab-delimited genome file and then create tabix index
keywords:
- bgzip
- compress
- index
- tabix
- vcf
tools:
- tabix:
description: Generic indexer for TAB-delimited genome position files.
homepage: https://www.htslib.org/doc/tabix.html
documentation: https://www.htslib.org/doc/tabix.1.html
doi: 10.1093/bioinformatics/btq671
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- tab:
type: file
description: TAB-delimited genome position file
pattern: "*.{bed,gff,sam,vcf}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- gz:
type: file
description: Output compressed file
pattern: "*.{gz}"
- tbi:
type: file
description: tabix index file
pattern: "*.{gz.tbi}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@maxulysse"