mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
|
name: "centrifuge_kreport"
|
||
|
|
description: Creates Kraken-style reports from centrifuge out files
|
||
|
|
keywords:
|
||
|
|
- metagenomics
|
||
|
|
tools:
|
||
|
|
- centrifuge:
|
||
|
|
description: Centrifuge is a classifier for metagenomic sequences.
|
||
|
|
homepage: https://ccb.jhu.edu/software/centrifuge/
|
||
|
|
documentation: https://ccb.jhu.edu/software/centrifuge/manual.shtml
|
||
|
|
doi: 10.1101/gr.210641.116
|
||
|
|
licence: ["GPL v3"]
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- results:
|
||
|
|
type: file
|
||
|
|
description: File containing the centrifuge classification results
|
||
|
|
pattern: "*.{txt}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- kreport:
|
||
|
|
type: file
|
||
|
|
description: |
|
||
|
|
File containing kraken-style report from centrifuge
|
||
|
|
out files.
|
||
|
|
pattern: "*.{txt}"
|
||
|
|
authors:
|
||
|
|
- "@sofstam"
|
||
|
|
- "@jfy133"
|