nf-core_modules/tests/modules/biobambam/bammerge/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { BIOBAMBAM_BAMMERGE } from '../../../../modules/biobambam/bammerge/main.nf'
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workflow test_biobambam_bammerge_paired {
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input = [
[ id:'test', single_end:false ], // meta map
[
file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)
]
]
BIOBAMBAM_BAMMERGE ( input )
}
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workflow test_biobambam_bammerge_single {
input = [
[ id:'test', single_end:false ], // meta map
[
file(params.test_data['sarscov2']['illumina']['test_single_end_sorted_bam'], checkIfExists: true),
]
]
BIOBAMBAM_BAMMERGE ( input )
}