nf-core_modules/modules/mashtree/meta.yml

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name: mashtree
description: Quickly create a tree using Mash distances
keywords:
- tree
- mash
- fasta
- fastq
tools:
- mashtree:
description: Create a tree using Mash distances
homepage: https://github.com/lskatz/mashtree
documentation: https://github.com/lskatz/mashtree
tool_dev_url: https://github.com/lskatz/mashtree
doi: "https://doi.org/10.21105/joss.01762"
licence: ["GPL v3"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- seqs:
type: file
description: FASTA, FASTQ, GenBank, or Mash sketch files
pattern: "*.{fna,fna.gz,fasta,fasta.gz,fa,fa.gz,gbk,gbk.gz,fastq.gz,msh}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- tree:
type: file
description: A Newick formatted tree file
pattern: "*.{dnd}"
- matrix:
type: file
description: A TSV matrix of pair-wise Mash distances
pattern: "*.{tsv}"
authors:
- "@rpetit3"