2020-01-21 10:25:13 +00:00
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name: samtools index
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description: index a BAM or CRAM file
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2019-12-05 14:35:51 +00:00
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keywords:
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2020-01-21 10:25:13 +00:00
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- index
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2019-12-05 14:35:51 +00:00
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tools:
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- samtools:
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description: |
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SAMtools is a set of utilities for interacting with and post-processing
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short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
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These files are generated as output by short read aligners like BWA.
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homepage: http://www.htslib.org/
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documentation: hhttp://www.htslib.org/doc/samtools.html
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doi: 10.1093/bioinformatics/btp352
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input:
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-
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- input:
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type: file
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description: Input BAM or CRAM file
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pattern: *.{bam,cram}
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output:
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-
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- index:
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type: file
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description: BAM or CRAM index file
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pattern: *.{bai}
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authors:
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- @ewels
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