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25 lines
793 B
Text
25 lines
793 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { CHECKM_LINEAGEWF } from '../../../../modules/checkm/lineagewf/main.nf' addParams( options: [:] )
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workflow test_checkm_lineagewf {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true) ]
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fasta_ext = 'fasta'
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CHECKM_LINEAGEWF ( input, fasta_ext )
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}
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workflow test_checkm_lineagewf_multi {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true),
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)] ]
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fasta_ext = 'fasta'
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CHECKM_LINEAGEWF ( input, fasta_ext )
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}
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