mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 14:13:09 +00:00
17 lines
594 B
Text
17 lines
594 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
params.read_structure = "+T 12M11S+T"
|
||
|
|
|
||
|
|
include { FGBIO_FASTQTOBAM } from '../../../../modules/fgbio/fastqtobam/main.nf' addParams( options: [:] )
|
||
|
|
|
||
|
|
workflow test_fgbio_fastqtobam {
|
||
|
|
|
||
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
||
|
|
[ file(params.test_data['homo_sapiens']['illumina']['test_umi_1_fastq_gz'], checkIfExists: true),
|
||
|
|
file(params.test_data['homo_sapiens']['illumina']['test_umi_2_fastq_gz'], checkIfExists: true) ]
|
||
|
|
]
|
||
|
|
|
||
|
|
FGBIO_FASTQTOBAM ( input, "${params.read_structure}" )
|
||
|
|
}
|