nf-core_modules/tests/software/raxmlng/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { RAXMLNG as RAXMLNG_NO_BOOTSTRAP } from '../../../software/raxmlng/main.nf' addParams( options: [args:'--model GTR+G'] )
include { RAXMLNG as RAXMLNG_BOOTSTRAP } from '../../../software/raxmlng/main.nf' addParams( options: [args:'--all --model GTR+G --bs-trees 1000'] )
/*
* Test without bootstrapping
*/
workflow test_raxmlng_no_bootstrap {
input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]
RAXMLNG_NO_BOOTSTRAP ( input )
}
/*
* Test with bootstrapping
*/
workflow test_raxmlng_bootstrap {
input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]
RAXMLNG_BOOTSTRAP ( input )
}