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44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
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name: bbmap_index
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description: This module calls bbmap.sh to create an index from a fasta file, ready to be used by bbmap.sh in mapping mode.
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keywords:
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- mapping
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- index
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- fasta
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tools:
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- bbmap:
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description: BBMap is a short read aligner, as well as various other bioinformatic tools.
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homepage: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
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documentation: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
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tool_dev_url: None
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doi: ""
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licence: ['UC-LBL license (see package)']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing optional parameters to bbmap.sh
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: fasta
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description: fasta formatted file with nucleotide sequences
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pattern: "*.{fna,fa,fasta}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- db:
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type: directory
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description: Directory with index files
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pattern: "ref"
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authors:
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- "@daniellundin"
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