nf-core_modules/modules/bcftools/reheader/meta.yml

name: bcftools_reheader
description: Reheader a VCF file
keywords:
  - reheader
  - vcf
  - update header
tools:
  - reheader:
      description: |
        Modify header of VCF/BCF files, change sample names.
      homepage: http://samtools.github.io/bcftools/bcftools.html
      documentation: http://samtools.github.io/bcftools/bcftools.html#reheader
      doi: 10.1093/gigascience/giab008
      licence: ['GPL']

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - vcf:
      type: file
      description: VCF/BCF file
      pattern: "*.{vcf.gz,vcf,bcf}"
  - fai:
      type: file
      description: Fasta index to update header sequences with
      pattern: "*.{fai}"
  - header:
      type: file
      description: New header to add to the VCF
      pattern: "*.{header.txt}"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - version:
      type: file
      description: File containing software version
      pattern: "*.{version.txt}"
  - vcf:
      type: file
      description: VCF with updated header
      pattern: "*.{vcf.gz}"

authors:
  - "@bjohnnyd"