nf-core_modules/software/bwameth/index/meta.yml

54 lines
1.6 KiB
YAML
Raw Normal View History

2021-02-17 17:03:48 +00:00
name: bwameth_index
description: Performs indexing of c2t converted reference genome
keywords:
- bwameth
- 3-letter genome
- index
- methylseq
- bisulphite
- fasta
tools:
- bwameth:
description: |
Fast and accurate alignment of BS-Seq reads
using bwa-mem and a 3-letter genome.
homepage: https://github.com/brentp/bwa-meth
documentation: https://github.com/brentp/bwa-meth
arxiv: arXiv:1401.1129
params:
- outdir:
type: string
description: |
The pipeline's output directory. By default, the module will
output files into `$params.outdir/<SOFTWARE>`
- publish_dir_mode:
type: string
description: |
Value for the Nextflow `publishDir` mode parameter.
Available: symlink, rellink, link, copy, copyNoFollow, move.
- enable_conda:
type: boolean
description: |
Run the module with Conda using the software specified
via the `conda` directive
- singularity_pull_docker_container:
type: boolean
description: |
Instead of directly downloading Singularity images for use with Singularity,
force the workflow to pull and convert Docker containers instead.
input:
- fasta:
type: file
description: Input genome fasta file
output:
- index:
type: dir
description: Directory containing bwameth genome index
pattern: "index"
2021-02-17 17:03:48 +00:00
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@phue"