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42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
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name: imputeme_vcftoprs
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description: inputs a VCF-file with whole genome DNA sequencing. Outputs a JSON with polygenic risk scores.
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keywords:
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- PRS, VCF
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tools:
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- imputeme:
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description:
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homepage: www.impute.me
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documentation: https://hub.docker.com/repository/docker/lassefolkersen/impute-me
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tool_dev_url: https://github.com/lassefolkersen/impute-me
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doi: "https://doi.org/10.3389/fgene.2020.00578"
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licence: LGPL3
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ vcf:'test', single_end:false ]
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- vcf:
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type: file
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description: vcf file
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pattern: "*.{vcf}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- json:
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type: file
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description: json containing Z-scores for all calculated PRS
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pattern: "*.{json}"
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authors:
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- "@lassefolkersen"
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