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https://github.com/MillironX/nf-core_modules.git
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56 lines
1.6 KiB
YAML
56 lines
1.6 KiB
YAML
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name: "ampir"
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description: A fast and user-friendly method to predict antimicrobial peptides (AMPs) from any given size protein dataset. ampir uses a supervised statistical machine learning approach to predict AMPs.
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keywords:
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- ampir
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- amp
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- antimicrobial peptide prediction
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tools:
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- "ampir":
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description: "A toolkit to predict antimicrobial peptides from protein sequences on a genome-wide scale."
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homepage: "https://github.com/Legana/ampir"
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documentation: "https://github.com/Legana/ampir"
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tool_dev_url: "https://github.com/Legana/ampir"
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doi: "10.1093/bioinformatics/btaa653"
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licence: ["GPL v2"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- faa:
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type: file
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description: FASTA file containing amino acid sequences
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pattern: "*.{faa,fasta}"
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- model:
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type: value
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description: Model for AMP prediction
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pattern: "{precursor,mature}"
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- cut_off:
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type: value
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description: Cut-off for AMP prediction
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pattern: "[0-9][0-9]"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- amps:
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type: file
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description: File containing AMP predictions
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pattern: "prediction.fasta"
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- output_name:
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type: value
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description: File name of the FASTA output file
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pattern: "*.{faa,fasta}"
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authors:
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- "@jasmezz"
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