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42 lines
1 KiB
YAML
42 lines
1 KiB
YAML
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name: blast_tblastn
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description: Queries a BLAST DNA database
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keywords:
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- fasta
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- blast
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- tblastn
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- DNA sequence
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tools:
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- blast:
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description: |
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Protein to Translated Nucleotide BLAST.
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homepage: https://blast.ncbi.nlm.nih.gov/Blast.cgi
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documentation: https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Blastdocs
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doi: 10.1016/S0022-2836(05)80360-2
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licence: ["US-Government-Work"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: Input fasta file containing queries sequences
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pattern: "*.{fa,fasta}"
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- db:
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type: directory
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description: Directory containing blast database
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pattern: "*"
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output:
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- txt:
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type: file
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description: File containing blastn hits
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pattern: "*.{tblastn.txt}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@yumisims"
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- "@gq2"
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