mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 14:13:09 +00:00
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
|
name: "haplogrep2_classify"
|
||
|
|
description: classification into haplogroups
|
||
|
|
keywords:
|
||
|
|
- haplogroups.
|
||
|
|
tools:
|
||
|
|
- "haplogrep2":
|
||
|
|
description: "A tool for mtDNA haplogroup classification."
|
||
|
|
homepage: "https://github.com/seppinho/haplogrep-cmd"
|
||
|
|
documentation: "https://github.com/seppinho/haplogrep-cmd"
|
||
|
|
tool_dev_url: "https://github.com/seppinho/haplogrep-cmd"
|
||
|
|
doi: ""
|
||
|
|
licence: "['MIT']"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- inputfile:
|
||
|
|
type: file
|
||
|
|
description: valid options are hsd, vcf, or fasta files
|
||
|
|
pattern: "*.{vcf,vcf.gz,fasta,hsd}"
|
||
|
|
- format:
|
||
|
|
type: stringformat of file either vcf fasta or hsd
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- txt:
|
||
|
|
type: file
|
||
|
|
description: text file with classification information
|
||
|
|
pattern: "*.{txt}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@lucpen"
|