nf-core_modules/tests/modules/bismark/deduplicate/test.yml

- name: Run bismark deduplicate test workflow
  command: nextflow run ./tests/modules/bismark/deduplicate -entry test_bismark_deduplicate -c tests/config/nextflow.config
  tags:
    - bismark
    - bismark/deduplicate
  files:
    - path: output/bismark/test.paired_end.methylated.deduplicated.bam
      md5sum: 82213a207048bcb5d8cc1cee92703a29
    - path: output/bismark/test.paired_end.methylated.deduplication_report.txt
      md5sum: 86aaf87bac9ccdc3cc83628f20b902dc
add bismark/deduplicate + tests 2021-02-23 17:02:16 +00:00			`- name: Run bismark deduplicate test workflow`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run ./tests/modules/bismark/deduplicate -entry test_bismark_deduplicate -c tests/config/nextflow.config`
add bismark/deduplicate + tests 2021-02-23 17:02:16 +00:00			`tags:`
			`- bismark`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- bismark/deduplicate`
add bismark/deduplicate + tests 2021-02-23 17:02:16 +00:00			`files:`
Fix 459 (#534) * Update test data names. Closes: #459 Thanks: @FriederikeHanssen (`samtools` tests are already fixed by another commit) * Fix file names in tests. The update of test data name required changes in the test yml files. I also updated the `bismark/summary/main.nf` file to get its data from the `params.test_data` map. 2021-06-14 11:24:59 +00:00			`- path: output/bismark/test.paired_end.methylated.deduplicated.bam`
			`md5sum: 82213a207048bcb5d8cc1cee92703a29`
			`- path: output/bismark/test.paired_end.methylated.deduplication_report.txt`
			`md5sum: 86aaf87bac9ccdc3cc83628f20b902dc`