nf-core_modules/tests/modules/graphmap2/index/main.nf

#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { GRAPHMAP2_INDEX } from '../../../../modules/graphmap2/index/main.nf' addParams( options: [:] )

workflow test_graphmap2_index {

    fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)

    GRAPHMAP2_INDEX ( fasta )
}
add graphmap index and align modules (from nanoseq modules) (#468) * add graphmap index module * add graphmap2/index * add graohmap2 align module * remove graphmap2 align md5sum 2021-04-30 12:18:58 +00:00			`#!/usr/bin/env nextflow`

			`nextflow.enable.dsl = 2`

Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`include { GRAPHMAP2_INDEX } from '../../../../modules/graphmap2/index/main.nf' addParams( options: [:] )`
add graphmap index and align modules (from nanoseq modules) (#468) * add graphmap index module * add graphmap2/index * add graohmap2 align module * remove graphmap2 align md5sum 2021-04-30 12:18:58 +00:00
			`workflow test_graphmap2_index {`

			`fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)`

			`GRAPHMAP2_INDEX ( fasta )`
			`}`