nf-core_modules/tests/modules/tiddit/sv/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { TIDDIT_SV } from '../../../../modules/tiddit/sv/main.nf' addParams( options: [:] )
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workflow test_tiddit_sv {
input = [
[ id:'test' ], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ]
]
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
fai = file(params.test_data['sarscov2']['genome']['genome_fasta_fai'], checkIfExists: true)
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TIDDIT_SV ( input, fasta, fai )
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}
workflow test_tiddit_sv_no_ref {
input = [
[ id:'test' ], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ]
]
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TIDDIT_SV ( input, [], [] )
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}