mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
46 lines
1.1 KiB
YAML
46 lines
1.1 KiB
YAML
|
name: controlfreec_freec2circos
|
||
|
|
description: Format Freec output to circos input format
|
||
|
|
keywords:
|
||
|
|
- cna
|
||
|
|
- cnv
|
||
|
|
- somatic
|
||
|
|
- single
|
||
|
|
- tumor-only
|
||
|
|
tools:
|
||
|
|
- controlfreec:
|
||
|
|
description: Copy number and genotype annotation from whole genome and whole exome sequencing data.
|
||
|
|
homepage: http://boevalab.inf.ethz.ch/FREEC
|
||
|
|
documentation: http://boevalab.inf.ethz.ch/FREEC/tutorial.html
|
||
|
|
tool_dev_url: https://github.com/BoevaLab/FREEC/
|
||
|
|
doi: "10.1093/bioinformatics/btq635"
|
||
|
|
licence: ["GPL >=2"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- ratio:
|
||
|
|
type: file
|
||
|
|
description: ratio file generated by FREEC
|
||
|
|
pattern: "*.ratio.txt"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- circos:
|
||
|
|
type: file
|
||
|
|
description: Txt file
|
||
|
|
pattern: "*.circos.txt"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@FriederikeHanssen"
|