mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
21 lines
632 B
Text
21 lines
632 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { SEQKIT_SPLIT2 } from '../../../../software/SEQKIT/SPLIT2/main.nf' addParams( options: [:] )
|
||
|
|
|
||
|
|
workflow test_seqkit_split2_single_end {
|
||
|
|
def input = []
|
||
|
|
input = [ [ id:'test', single_end:true ], // meta map
|
||
|
|
file("${launchDir}/tests/data/dna/SRR396636_R1.fastq.gz", checkIfExists: true) ]
|
||
|
|
|
||
|
|
SEQKIT_SPLIT2 ( input )
|
||
|
|
}
|
||
|
|
|
||
|
|
workflow test_seqkit_split2_paired_end {
|
||
|
|
def input = []
|
||
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
||
|
|
file("${launchDir}/tests/data/dna/SRR396636_*", checkIfExists: true) ]
|
||
|
|
|
||
|
|
SEQKIT_SPLIT2 ( input )
|
||
|
|
}
|