mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 00:02:04 +00:00
15 lines
496 B
Text
15 lines
496 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { UCSC_BEDCLIP } from '../../../../software/ucsc/bedclip/main.nf' addParams( options: [suffix:'.clip'] )
|
||
|
|
|
||
|
|
workflow test_ucsc_bedclip {
|
||
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
||
|
|
file(params.test_data['sarscov2']['illumina']['test_bedgraph'], checkIfExists: true)
|
||
|
|
]
|
||
|
|
sizes = file(params.test_data['sarscov2']['genome']['genome_sizes'], checkIfExists: true)
|
||
|
|
|
||
|
|
UCSC_BEDCLIP ( input, sizes )
|
||
|
|
}
|