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nf-core_modules/modules/multiqc/meta.yml

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Fixing MULTIQC module and adding tests (#1) * fix multiqc process * fix multiqc tests * move multiqc test input data into tests/data/fastqc/ folder Move input tests data into tests/data/fastqc/ and linking those files into software/multiqc/test/input/ as stated from the project documentation * add multiqc github workflow * remove unused file * generalize multiqc input data User must collect all desidered files in a channel (as described in https://seqera.io/training/#_multiqc_report * update meta information
2020-11-29 07:50:23 +00:00
name: MultiQC
description: Aggregate results from bioinformatics analyses across many samples into a single report
initial attempt for multiqc module
2020-11-23 13:01:55 +00:00
keywords:
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
- QC
- bioinformatics tools
- Beautiful stand-alone HTML report
initial attempt for multiqc module
2020-11-23 13:01:55 +00:00
tools:
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
- multiqc:
description: |
MultiQC searches a given directory for analysis logs and compiles a HTML report.
It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
homepage: https://multiqc.info/
documentation: https://multiqc.info/docs/
licence: ["GPL-3.0-or-later"]
initial attempt for multiqc module
2020-11-23 13:01:55 +00:00
input:
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
- multiqc_files:
type: file
description: |
List of reports / files recognised by MultiQC, for example the html and zip output of FastQC
initial attempt for multiqc module
2020-11-23 13:01:55 +00:00
output:
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
- report:
type: file
description: MultiQC report file
pattern: "multiqc_report.html"
- data:
type: dir
description: MultiQC data dir
pattern: "multiqc_data"
- plots:
type: file
description: Plots created by MultiQC
pattern: "*_data"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
initial attempt for multiqc module
2020-11-23 13:01:55 +00:00
authors:
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
- "@abhi18av"
- "@bunop"
- "@drpatelh"
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