mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
59 lines
1.5 KiB
YAML
59 lines
1.5 KiB
YAML
|
name: "ultra_align"
|
||
|
|
description: uLTRA aligner - A wrapper around minimap2 to improve small exon detection - Map reads on genome
|
||
|
|
keywords:
|
||
|
|
- uLTRA
|
||
|
|
- align
|
||
|
|
- minimap2
|
||
|
|
- long_read
|
||
|
|
- isoseq
|
||
|
|
- ont
|
||
|
|
tools:
|
||
|
|
- "ultra":
|
||
|
|
description: "Splice aligner of long transcriptomic reads to genome."
|
||
|
|
homepage: "https://github.com/ksahlin/uLTRA"
|
||
|
|
documentation: "https://github.com/ksahlin/uLTRA"
|
||
|
|
tool_dev_url: "https://github.com/ksahlin/uLTRA"
|
||
|
|
doi: "10.1093/bioinformatics/btab540"
|
||
|
|
licence: "['GNU GPLV3']"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- reads:
|
||
|
|
type: file
|
||
|
|
description: A fasta or fastq file of reads to align
|
||
|
|
pattern: "*.{fa,fasta,fastq}"
|
||
|
|
- genome:
|
||
|
|
type: file
|
||
|
|
description: A fasta file of reference genome
|
||
|
|
pattern: "*.{fa,fasta}"
|
||
|
|
- pickle:
|
||
|
|
type: file
|
||
|
|
description: Pickle files generated by uLTRA index
|
||
|
|
pattern: "*.pickle"
|
||
|
|
- db:
|
||
|
|
type: file
|
||
|
|
description: Database generated by uLTRA index
|
||
|
|
pattern: "*.db"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- bam:
|
||
|
|
type: file
|
||
|
|
description: The aligned reads in bam format
|
||
|
|
pattern: "*.bam"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@sguizard"
|