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nf-core_modules/tests/modules/seqkit/replace/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { SEQKIT_REPLACE } from '../../../../modules/seqkit/replace/main.nf'
include { SEQKIT_REPLACE as SEQKIT_REPLACEUNCOMP } from '../../../../modules/seqkit/replace/main.nf'
workflow test_seqkit_replace {
input = [ [ id:'test' ], // meta map
[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
]
SEQKIT_REPLACE ( input )
}
workflow test_seqkit_replace_uncomp {
input = [ [ id:'test' ], // meta map
[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
]
SEQKIT_REPLACEUNCOMP ( input )
}