nf-core_modules/modules/ssuissero/meta.yml

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name: ssuissero
description: Serotype prediction of Streptococcus suis assemblies
keywords:
- bacteria
- fasta
- streptococcus
tools:
- ssuissero:
description: Rapid Streptococcus suis serotyping pipeline for Nanopore Data
homepage: https://github.com/jimmyliu1326/SsuisSero
documentation: https://github.com/jimmyliu1326/SsuisSero
tool_dev_url: https://github.com/jimmyliu1326/SsuisSero
doi: ""
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: Assembly in FASTA format
pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz,faa,faa.gz}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- tsv:
type: file
description: Tab-delimited serotype prediction
pattern: "*.{tsv}"
authors:
- "@rpetit3"