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nf-core_modules/tests/modules/hmmer/hmmsearch/test.yml

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feat: add hmmsearch module and tests (#1273) * feat: add hmmsearch module and tests * chore: set medium resource requirements * tests: look for correct output * fix: add when condition * Apply suggestions to meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * refactor: create gzip compressed output * docs: describe compressed in-/output Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-02-23 14:32:33 +00:00
- name: hmmer hmmsearch test_hmmer_hmmsearch
command: nextflow run tests/modules/hmmer/hmmsearch -entry test_hmmer_hmmsearch -c tests/config/nextflow.config
tags:
- hmmer/hmmsearch
- hmmer
files:
- path: output/hmmer/test.txt.gz
contains:
Prettier (#1405) * style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
2022-03-18 13:27:50 +00:00
- "[ok]"
feat: add hmmsearch module and tests (#1273) * feat: add hmmsearch module and tests * chore: set medium resource requirements * tests: look for correct output * fix: add when condition * Apply suggestions to meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * refactor: create gzip compressed output * docs: describe compressed in-/output Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-02-23 14:32:33 +00:00
- path: output/hmmer/versions.yml
md5sum: ed0808c10abd205c6bd0fb01f45259bb
- name: hmmer hmmsearch test_hmmer_hmmsearch_optional
command: nextflow run tests/modules/hmmer/hmmsearch -entry test_hmmer_hmmsearch_optional -c tests/config/nextflow.config
tags:
- hmmer/hmmsearch
- hmmer
files:
- path: output/hmmer/test.sto.gz
md5sum: d3121aa33455074c566fb7f8fdcda7b0
- path: output/hmmer/test.domtbl.gz
contains:
Prettier (#1405) * style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
2022-03-18 13:27:50 +00:00
- "# [ok]"
feat: add hmmsearch module and tests (#1273) * feat: add hmmsearch module and tests * chore: set medium resource requirements * tests: look for correct output * fix: add when condition * Apply suggestions to meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * refactor: create gzip compressed output * docs: describe compressed in-/output Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-02-23 14:32:33 +00:00
- path: output/hmmer/test.tbl.gz
contains:
Prettier (#1405) * style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
2022-03-18 13:27:50 +00:00
- "# [ok]"
feat: add hmmsearch module and tests (#1273) * feat: add hmmsearch module and tests * chore: set medium resource requirements * tests: look for correct output * fix: add when condition * Apply suggestions to meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * refactor: create gzip compressed output * docs: describe compressed in-/output Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-02-23 14:32:33 +00:00
- path: output/hmmer/test.txt.gz
contains:
Prettier (#1405) * style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
2022-03-18 13:27:50 +00:00
- "[ok]"
feat: add hmmsearch module and tests (#1273) * feat: add hmmsearch module and tests * chore: set medium resource requirements * tests: look for correct output * fix: add when condition * Apply suggestions to meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * refactor: create gzip compressed output * docs: describe compressed in-/output Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-02-23 14:32:33 +00:00
- path: output/hmmer/versions.yml
md5sum: ebdcb08ae540e840f7b5c4c75a3a2993
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