nf-core_modules/tests/modules/vardictjava/test.yml

- name: vardictjava test_vardictjava_bam
  command: nextflow run ./tests/modules/vardictjava -entry test_vardictjava_bam -c ./tests/config/nextflow.config -c ./tests/modules/vardictjava/nextflow.config
  tags:
    - vardictjava
  files:
    - path: output/vardictjava/test.vcf.gz
      md5sum: 3f1f227afc532bddeb58f16fd3013fc8
Added java options to vardict java (#1695) * Added java options to vardict java * updated test.yml * correctly added java options * Added automatic version numbers for vardictjava * possible fix for version number in conda * removed the cram tests * linting * Update modules/vardictjava/main.nf Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> * Update modules/vardictjava/main.nf Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> * removed the version line Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> 2022-08-10 12:13:03 +00:00			`- name: vardictjava test_vardictjava_bam`
			`command: nextflow run ./tests/modules/vardictjava -entry test_vardictjava_bam -c ./tests/config/nextflow.config -c ./tests/modules/vardictjava/nextflow.config`
created the module 2022-04-27 09:12:58 +00:00			`tags:`
Added the .bai and .fai files 2022-04-28 08:23:07 +00:00			`- vardictjava`
created the module 2022-04-27 09:12:58 +00:00			`files:`
Added the .bai and .fai files 2022-04-28 08:23:07 +00:00			`- path: output/vardictjava/test.vcf.gz`
Added the statistical tests and conversion to vcf 2022-04-28 13:33:27 +00:00			`md5sum: 3f1f227afc532bddeb58f16fd3013fc8`