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39 lines
1 KiB
YAML
39 lines
1 KiB
YAML
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name: homer_makeucscfile
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description: Create a UCSC bed graph with the HOMER suite
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keywords:
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- peaks
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- bed
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- bedGraph
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tools:
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- homer:
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description: |
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HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
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documentation: http://homer.ucsd.edu/homer/
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doi: 10.1016/j.molcel.2010.05.004.
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- tagDir:
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type: directory
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description: "The 'Tag Directory'"
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pattern: "tagDir"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bedGraph:
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type: file
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description: The UCSC bed graph
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pattern: "tag_dir/*ucsc.bedGraph.gz"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@EMiller88"
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